nimisha Journals

2025
  • (30) Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici, A review on the applications of Transformer-based language models for nucleotide sequence analysis, Computational and Structural Biotechnology Journal, Vol:27, Issue:,Pages:1244-1254,April, 2025, ISSN: , DOI: .
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  • (29) Nimisha Ghosh, Sankar Kumar Mridha, Rourab Paul, LASSO-mCGA: Machine Learning and Modi ed Compact Genetic Algorithm-Based Biomarker Selection for Breast Cancer Subtype Classi cation, IEEE Access, Vol:13, Issue:,Pages: 17673-17682,January, 2025, ISSN: , DOI: .
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    2024
  • (28) Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici, Predicting Transcription Factor Binding Sites with Deep Learning, International Journal of Molecular Sciences, Vol:25, Issue:,Pages:4990,April, 2024, ISSN: , DOI: .
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    2023
  • (27) Daniele Santoni, Nimisha Ghosh, Carlo Derelitto, Indrajit Saha, Transcription Factor Driven Gene Regulation in COVID-19 Patients, Viruses, Vol:15, Issue:,Pages:1188,July, 2023, ISSN: , DOI: .
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  • (26) Nimisha Ghosh, Indrajit Saha, Anna Gambin, Interactome-Based Machine Learning Predicts Potential Therapeutics for COVID-19, ACS Omega, Vol:8, Issue:,Pages:13840-13854,February, 2023, ISSN: , DOI: .
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  • (25) Nimisha Ghosh, Indrajit Banerjee, Energy-Efficient Compressive Sensing Based Data Gathering and Scheduling in Wireless Sensor Networks, Wireless Personal Communications, Vol:128, Issue:,Pages:2589-2618,February, 2023, ISSN: , DOI: .
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    2022
  • (24) Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Suman Nandi, Bioinformatics pipeline unveils genetic variability to synthetic vaccine design for Indian SARS-CoV-2 genomes, International Immunopharmacology, Vol:112, Issue:,Pages: 109224,July, 2022, ISSN: , DOI: .
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  • (23) Nimisha Ghosh, Indrajit Saha, Suman Nandi, Nikhil Sharma, Characterisation of SARS-CoV-2 clades based on signature SNPs unveils continuous evolution, Methods, Vol:203, Issue:,Pages:282-29,April, 2022, ISSN: , DOI: .
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  • (22) Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Palindromic target site identification in SARS-CoV-2, MERS-CoV and SARS-CoV-1 by adopting CRISPR-Cas technique, Gene, Vol:818, Issue:,Pages:146136,May, 2022, ISSN: , DOI: .
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  • (21) Nimisha Ghosh, Suman Nandi, Indrajit Saha, Phylogenetic analysis of 17271 Indian SARS-CoV-2 genomes to identify temporal and spatial hotspot mutations, Plos One, Vol:17, Issue:,Pages:e0265579,August, 2022, ISSN: , DOI: .
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  • (20) Nimisha Ghosh, Indrajit Saha, Dariusz Plewczynski, Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1, IEEE Access, Vol:10, Issue:,Pages: 23708-23715,February, 2022, ISSN: , DOI: .
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  • (19) Nimisha Ghosh, Suman Nandi, Indrajit Saha, A Review on Evolution of Emerging SARS-CoV-2 Variants based on Spike Glycoprotein, International Immunopharmacology, Vol:105, Issue:,Pages:108565,April, 2022, ISSN: , DOI: .
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  • (18) Daniele Santoni, Nimisha Ghosh, Indrajit Saha, An entropy-based study on mutational trajectory of SARS-CoV-2 in India, Infection, Genetics and Evolution, Vol:97, Issue:,Pages:105154,May, 2022, ISSN: , DOI: .
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  • (17) Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Jnanendra Prasad Sarkar, Human miRNAs to identify potential regions of SARS-CoV-2 , ACS omega, Vol:7, Issue:,Pages:21086-21101,June, 2022, ISSN: , DOI: 10.1021/acsomega.2c01907.
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  • (16) Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Palindromic target site identification in SARS-CoV-2, MERS-CoV and SARS-CoV-1 by adopting CRISPR-Cas technique, Gene, Vol:818, Issue:,Pages:146136,April, 2022, ISSN: , DOI: .
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  • (15) Nimisha Ghosh, Suman Nandi, Indrajit Saha, A review on evolution of emerging SARS-CoV-2 variants based on spike glycoprotein, International immunopharmacology, Vol:105, Issue:,Pages:108565,April, 2022, ISSN: , DOI: .
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  • (14) Nimisha Ghosh, Suman Nandi, Indrajit Saha, Phylogenetic analysis of 17271 Indian SARS-CoV-2 genomes to identify temporal and spatial hotspot mutations, PloS One, Vol:17, Issue:,Pages:e0265579,March, 2022, ISSN: , DOI: .
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  • (13) Nimisha Ghosh, Indrajit Saha, Dariusz Plewczynski, Genome-Wide analysis to identify palindromes, mirror and inverted repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1, IEEE Access, Vol:10, Issue:,Pages:23708-23715,February, 2022, ISSN: , DOI: .
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  • (12) Daniele Santoni, Nimisha Ghosh, Indrajit Saha, An entropy-based study on mutational trajectory of SARS-CoV-2 in India, Infection, Genetics and Evolution, Vol:97, Issue:,Pages:105154,January, 2022, ISSN: , DOI: .
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    2021
  • (11) Indrajit Saha, Nimisha Ghosh, Nikhil Sharma, Suman Nandi, Hotspot mutations in SARS-CoV-2, Frontiers in genetics, Vol:12, Issue:,Pages:753440,November, 2021, ISSN: , DOI: .
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  • (10) Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Interactome of human and SARS-CoV-2 proteins to identify human hub proteins associated with comorbidities, Computers in biology and medicine, Vol:138, Issue:,Pages:104889,November, 2021, ISSN: , DOI: .
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  • (9) Rourab Paul, Nimisha Ghosh, Suman Sau, Amlan Chakrabarti, Prasant Mohapatra, Blockchain based secure smart city architecture using low resource IoTs, Computer Networks, Vol:196, Issue:,Pages:108234,September, 2021, ISSN: , DOI: .
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  • (8) Nimisha Ghosh, Sayantan Saha, Rourab Paul, iDCR: Improved Dempster Combination Rule for multisensor fault diagnosis, Engineering Applications of Artificial Intelligence, Vol:104, Issue:,Pages:104369,September, 2021, ISSN: , DOI: .
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  • (7) Nimisha Ghosh, Nikhil Sharma, Indrajit Saha, Immunogenicity and antigenicity based T-cell and B-cell epitopes identification from conserved regions of 10664 SARS-CoV-2 genomes, Infection, Genetics and Evolution, Vol:92, Issue:,Pages:104823,August, 2021, ISSN: , DOI: .
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  • (6) Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Suman Nandi, Dariusz Plewczynski, Genome-wide analysis of 10664 SARS-CoV-2 genomes to identify virus strains in 73 countries based on single nucleotide polymorphism, Virus research, Vol:298, Issue:,Pages:198401,June, 2021, ISSN: , DOI: .
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  • (5) Indrajit Saha, Nimisha Ghosh, Ayan Pradhan, Nikhil Sharma, Debasree Maity, Kaushik Mitra, Whole genome analysis of more than 10 000 SARS-CoV-2 virus unveils global genetic diversity and target region of NSP6, Briefings in Bioinformatics, Vol:22, Issue:,Pages:1106-1121,March, 2021, ISSN: , DOI: .
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  • (4) Nimisha Ghosh, Indrajit Banerjee, IoT-based freezing of gait detection using grey relational analysis, Internet of Things, Vol:13, Issue:,Pages:100068,March, 2021, ISSN: , DOI: .
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  • (3) Indrajit Saha, Nimisha Ghosh, Debasree Maity, Arjit Seal, Dariusz Plewczynski, COVID-DeepPredictor: recurrent neural network to predict SARS-CoV-2 and other pathogenic viruses, Frontiers in genetics, Vol:12, Issue:,Pages:569120,February, 2021, ISSN: , DOI: .
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  • (2) Nimisha Ghosh, Nikhil Sharma, Indrajit Saha, Sudipto Saha, Genome-wide analysis of Indian SARS-CoV-2 genomes to identify T-cell and B-cell epitopes from conserved regions based on immunogenicity and antigenicity, International immunopharmacology, Vol:91, Issue:,Pages:107276,February, 2021, ISSN: , DOI: .
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    2020
  • (1) Nimisha Ghosh, Rourab Paul, Satyabrata Maity, Krishanu Maity, Sayantan Saha, Fault Matters: Sensor data fusion for detection of faults using Dempster–Shafer theory of evidence in IoT-based applications, Expert Systems with Applications, Vol:162, Issue:,Pages:113887,December, 2020, ISSN: , DOI: .
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